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Works published in 1999 Awards given in 2000 except as indicated
- A Deepness in the Sky, Vernor Vinge
- Darwin's Radio, Greg Bear
- Teranesia, Greg Egan
- A Civil Campaign, Lois McMaster Bujold
- Harry Potter and the Prisoner of Azkaban, J. K. Rowling
- The Sky Road, Ken MacLeod
- Cryptonomicon, Neal Stephenson
- Mr. X, Peter Straub
- The Gumshoe, the Witch, and the Virtual Corpse, Keith Hartman
- Tamsin, Peter S. Beagle
- Ender's Shadow, Orson Scott Card
Locus (sf novel)
Geffen Winner (sf book) [2001]
Seiun (foreign novel) [2001]
- The Conqueror's Child, Suzy McKee Charnas
- The Divinity Student, Michael Cisco
- The Wild Swans, Peg Kerr
- Wither, J. G. Passarella
- Silver Screen, Justina Robson
- Thraxas, Martin Scott
- The Veiled Web, Catherine Asaro
- Minions of the Moon, Richard Bowes
- Rhapsody, Elizabeth Haydon
- A Red Heart of Memories, Nina Kiriki Hoffman
- A Dark Victory, Dave Luckett
- Time Future, Maxine McArthur
- The Annunciate, Severna Park
- Aramaya, Jane Routley
- Flashforward, Robert J. Sawyer
Aurora Winner (long-form work in English)
Seiun (translated novel) [2002]
- Code of Conduct, Kristine Smith
- Starfish, Peter Watts
- Time: Manifold 1, Stephen Baxter
- The Martian Race, Gregory Benford
- The Rainy Season, James P. Blaylock
- The Book of Revelation, Damien Broderick & Rory Barnes
- The Marriage of Sticks, Jonathan Carroll
- Precursor, C. J. Cherryh
- Gardens of the Moon, Steven Erikson
- All Tomorrow's Parties, William Gibson
- Dark Cities Underground, Lisa Goldstein
- Forever Free, Joe Haldeman
- The Shadow of Ararat, Thomas Harlan
- Shiva 3000, Jan Lars Jensen
- Into the Dark, Victor Kelleher
- The Ivory Trail, Victor Kelleher
- A Calculus of Angels, J. Gregory Keyes
- Daughter of the Forest, Juliet Marillier
- The Terrorists of Irustan, Louise Marley
- Souls in the Great Machine, Sean McMullen
- Tower of Dreams, Jamil Nasir
- The Chosen, Ricardo Pinto
- Greenhouse Summer, Norman Spinrad
- Singer from the Sea, Sheri S. Tepper
- Bios, Robert Charles Wilson
Locus (sf novel)
Aurora (long-form work in English)
- David Brin’s Out of Time 3: The Game of Worlds, Roger MacBride Allen
- The Folk Keeper, Franny Billingsley
- "Black Jewels Trilogy", Anne Bishop
- Flesh and Silver, Stephen L. Burns
- The Chronicles of Alvin Maker, Orson Scott Card
- The Holdfast Chronicles, Suzy McKee Charnas
- I Was a 6th Grade Alien, Bruce Coville
- Resurrection Day, Brendan DuBois
- "Lord Darcy", Randall Garrett
- Foreign Devils, Christine Harris
- Dune: House Atreides, Brian Herbert & Kevin J. Anderson
- Indigo, Graham Joyce
- The Silk Code, Paul Levinson
Locus Winner (first novel)
- There and Back Again, by Max Merriwell, Pat Murphy
Seiun Winner (translated novel) [2002]
- A Prayer for the Dying, Stewart O'Nan
- Carpe Jugulum, Terry Pratchett
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